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Ensembl connection
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customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB
Ensembl connection
biomart
4.5 years ago
laura.fancello
• 0
1 result • Page
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Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
pangtaihin
• 0
Thank you very much Michael, but DESeq2, edgeR, limma are not specialized time-course framework, I think we might seek for another framewor…
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
ATpoint
★ 4.1k
High counts are generally less prone to noise compared to low counts. Bottom line is that you should stick to specialized testing framework…
Comment: Problem installing ChAMP on a MacBook
by
ATpoint
★ 4.1k
Did you run these lines? https://www.bioconductor.org/packages/release/bioc/html/ChAMP.html It is good practice to include code and error …
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 220
Looks like `sgv_pred` does not have the expected format. Was it created or edited manually? I would always recommend creating objects with …
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
pangtaihin
• 0
Thank you:)
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Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
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